OTS/OTSIncAMeasureApp/0-OTSModel/Measure/1-OTSInclution/SmplMeasureInclution.cs

using System;
using System.Collections.Generic;
using System.Drawing;
using System.Linq;
using System.Text;
using System.Threading;
using System.Threading.Tasks;
using OTSCOMMONCLR;
using OTSDataType;
using OTSModelSharp.Measure.OTSInclution;
using OTSModelSharp.ServiceCenter;
using OTSModelSharp.ServiceInterface;
using static OTSDataType.otsdataconst;

namespace OTSModelSharp
{
    class CSmplMeasureInclution :  CSmplMeasure
    {
       
     
        public CSmplMeasureInclution(string a_strWorkingFolder, COTSSample a_pSample) : base(a_strWorkingFolder, a_pSample)
        {
            SetWorkingFolder(a_strWorkingFolder);
            SetSample(a_pSample);
             m_classifyEngine = new CClassifyEngine();

        }

        // field image process
        public override bool FieldImageProcess(Point fldCenter, CBSEImgClr a_pBSEImg)
        {
            int nNewFieldId;
            nNewFieldId = m_pSampleRstFile.GetIdForANewField();

            // create a field
            curFldData = new CFieldDataIncA(a_pBSEImg, m_Sample.CalculatePixelSize());
            curFldData.SetId(nNewFieldId);
            curFldData.SetPosition(fldCenter);
            //first step:remove background of the bse image and compound all the finded particles.
            COTSXRayParam pXRayParam = m_Sample.GetMsrParams().GetXRayParam();
            log.Info("Begin to process image and get all particles!");
            GetOriginalParticles();
            
            // second step :filter the finded particles.
            log.Info("Begin to filter particles!");
            FilterParticles();

            CalculateParticlePos();
      
            if (pXRayParam.GetUsingXray() == (int)OTS_USING_X_RAY.Yes)
            {
                Thread.Sleep(100);
                CollectParticlesXrayData();
             
                Thread.Sleep(100);
            }
            log.Info("Begin to Calculate the image property of every particle!");
            var analysisparts = curFldData.ListAnalysisParticles;
            curFldData.CalParticleImageProp(analysisparts);//calculate particle image property such as feret diameter, DMAX etc.

            log.Info("Begin to classify particles! particle num:"+ curFldData.ListAnalysisParticles.Count);
            ClassifyParticles(curFldData.ListAnalysisParticles);

          

            // save field files
            m_Sample.GetMsrStatus().SetStatus(OTS_MSR_SAMPLE_STATUS.SUCCESSED);

            StartSaveFileThread(curFldData);

            return true; ;

        }





        // save field data
        protected void SaveFieldMgrData()
        {
            while (bSaveThreadWorking)
            {
                while (fieldQueue.Count() > 0)
                {
                    COTSFieldData f = fieldQueue.Dequeue();
                   


                    //save to disk first ,then pop . if the size is 0,then we know all the saving work is done.
                    SaveFieldFiles(f,m_pSampleRstFile.GetFieldFileSubFolderStr());


                }
                if (fieldQueue.Count() == 0)
                {
                    bSaveThreadWorking = false; //must set this flag,so the main thread can know this thread has exited.
                    return;
                }
            }
            return;
        }

        
        protected void StartSaveFileThread(COTSFieldData a_pFieldMgr)
        {
     
            
            fieldQueue.Enqueue(a_pFieldMgr);


            if (fieldQueue.Count() > 0) //if there's data in the queue and the previous thread has finished then start a new thread.
            {
                if (bSaveThreadWorking == false)
                {
                    bSaveThreadWorking = true;

                    m_thread_ptr = new System.Threading.Thread(this.SaveFieldMgrData);//m_thread_ptr = shared_ptr<thread>(new thread(&CSmplMeasureInc::SaveFieldMgrData, this));
                    m_thread_ptr.Start();//m_thread_ptr->detach();
                }
            }
        }

        public void FilterParticles()
        {
            // remove over sized particles, too small particles and get a analysis particles list
            // get pixel size
            double dPixelSize = m_Sample.CalculatePixelSize();        
         
            CSampleParam pMsrParam = m_Sample.GetMsrParams();
            COTSImageProcParam pImgProcessParam = pMsrParam.GetImageProcessParam();
            curFldData.FilterParticles(pImgProcessParam, dPixelSize );

         
     
            // make sure the particles list is not empty
            if (curFldData.NoAnalysisParticle())
            {
                log.Info("There's no particles to be analysed!");
                //return false;
            }
            return ;
        }
        //calculate the real sem position of the particle
        public void CalculateParticlePos()
        {
            double dPixelSize = m_Sample.CalculatePixelSize();
            CSEMStageData pCSEMStageData = m_pMsrThread.GetProjResultData().GetSEMStageData();
            foreach (var p in curFldData.ListAnalysisParticles)
            {
               
                Point fldOtsPos = new Point(curFldData.PoiPos.X, curFldData.PoiPos.Y);
                Point semPos = new Point();
                pCSEMStageData.ConverOTSToSEMPoint(fldOtsPos, ref semPos);
                p.SetAbsolutPos(semPos);
            }

        }

        public void CollectParticlesXrayData()
        {
            // get x-ray parameters
            COTSXRayParam pXRayParam = m_Sample.GetMsrParams().GetXRayParam();



            var listAnalysisparts = curFldData.ListAnalysisParticles;

            var pStatus = m_Sample.GetMsrStatus();
         
            ////=============================================
            curFldData.CreateXrayList(listAnalysisparts); 

          
            var xraymode = m_Sample.GetMsrParams().GetXRayParam().GetScanMode();

            // get x-ray list (analysis) by particle features
          uint  nXRayAQTime = (uint)pXRayParam.GetMidAnalyAQTime();
            if (xraymode == OTS_X_RAY_SCAN_MODE.FeatureMode)
            {
                log.Info("Begin  feature mode xray collection!AQTime:"+nXRayAQTime+" xrayNum:"+ listAnalysisparts.Count);
                m_EDSHardwareMgr.GetXRayByFeatures(listAnalysisparts, nXRayAQTime, true);
    

            }
            else 
            {
                log.Info("Begin  point mode xray collection!AQTime:" + nXRayAQTime + " xrayNum:" + listAnalysisparts.Count);
                // get x-ray list (analysis) by points
                m_EDSHardwareMgr.GetXRayByPoints(listAnalysisparts, nXRayAQTime, true);
     

            }
         
            return ;
        }

      

        public override void  ClassifyParticles(List<COTSParticleClr> parts)
        {

            try
            {
                var quantifyparts = parts;
                int nSize = quantifyparts.Count();

                // go through all analysis particles
                for (int i = 0; i < nSize; ++i)
                {
                    string libname = m_Sample.GetMsrParams().GetSTDName();
                    ClassifyIncAParticle(quantifyparts[i], libname);
                }
               
               
            }
            catch (Exception e)
            {
                log.Info(" classify failed. " + e.Message);
            }


        }
        public bool ClassifyIncAParticle(COTSParticleClr particle, string libname)// classify particles
        {

            int steelTech = (int)m_Sample.GetMsrParams().GetSteelTechnology();
            particle.SetType((int)OTS_PARTCLE_TYPE.NOT_IDENTIFIED);
            if (m_Sample.IfUsingSysSTD())
            {

                if (libname != "NoSTDDB")
                {
                    //var m_classifyEngine = new CClassifyEngine();
                    IClassifyEngine engine = m_classifyEngine.GetParticleEngine(libname);
                    engine.Classify(particle);
                }

                    if (particle.GetType() ==(int) OTS_PARTCLE_TYPE.NOT_IDENTIFIED)
                    {
                        IClassifyEngine engine;
                        engine = m_classifyEngine.GetIncClassifyEngine();
                        engine.ClassifyIncA(particle, steelTech);

                    }

            }
            else            
            {
                if (libname != "NoSTDDB")
                {
                    //var m_classifyEngine = new CClassifyEngine();
                    IClassifyEngine engine = m_classifyEngine.GetParticleEngine(libname);
                    engine.Classify(particle);

                }
            }
       
            return true;
        }
     

        public void GetOriginalParticles()
        {
            // measure status
            CMsrSampleStatus pStatus = m_Sample.GetMsrStatus();

            // get image process parameter
            CSampleParam pMsrParam = m_Sample.GetMsrParams();
            COTSImageProcParam pImgProcessParam = pMsrParam.GetImageProcessParam();

            // remove BES image background
            curFldData.RemoveBSEImageBG(pImgProcessParam);
            
        


            // check if this is an empty image
            if (curFldData.NoParticle())
            { // empty fields
                log.Info("ImageProcess: empty field.");
                //return false;
            }
            return ;
        }
        public bool SaveFieldFiles(COTSFieldData fldData,string filedFileFoler)
        {
            //loger.Warn("begin bitmap saving...");
            string strFieldFileFolder = filedFileFoler;

            CBSEImageFileMgr pBSEImgFileMgr = new CBSEImageFileMgr();
            pBSEImgFileMgr.SetBSEImg(fldData.GetBSEImage());
            int nId = fldData.GetId();
            string sFieldId;
            sFieldId = nId.ToString();
          

            string strBSEFilePathname = strFieldFileFolder + "\\" + m_pSampleRstFile. SMPL_MSR_RESULT_FIELDS_BSE + sFieldId + pBSEImgFileMgr.BMP_IMG_FILE_EXT;
            if (!pBSEImgFileMgr.SaveIntoBitmap(strBSEFilePathname))
            {
                log.Info("SaveFieldFiles: save BSE file failed.");
                return false;
            }

            // IncA Data list

            CIncAFileMgr pDBFileMgr = m_pSampleRstFile.DBFileMgr;


          

            pDBFileMgr.SaveStatusDataToDB();

            if (!pDBFileMgr.SaveIncADataToDB(curFldData.ListAnalysisParticles, fldData.GetPosition()))
            {
                log.Info("SaveFieldFiles: save inclusion file failed.");
                return false;
            }
        
            //save the xray data and element data.
            CPosXrayDBMgr PosXrayDBMgr = pDBFileMgr.GetPosXrayDBMgr();
            var m_listAnalysisPosXray = new List<CPosXrayClr>();
            foreach (var p in curFldData.ListAnalysisParticles)
            {
                m_listAnalysisPosXray.Add(p.GetXray());
            }
           
            if (!PosXrayDBMgr.SaveXray(m_listAnalysisPosXray, true))
            {
                log.Info("SaveFieldFiles: save analysis x-ray failed.");
                return false;
            }



            return true;
        }


    }
}