OTS/OxfordExtenderWrapper/ExtenderWrapper.cs


using OINA.Extender;
using OINA.Extender.Acquisition;
using OINA.Extender.Acquisition.Ed;
using OINA.Extender.Acquisition.Image;
using OINA.Extender.Data;
using OINA.Extender.Data.Ed;
using OINA.Extender.Data.Image;
using OINA.Extender.MicroscopeControl;
using OINA.Extender.Processing;
using OINA.Extender.Processing.Ed;
using OINA.Extender.Processing.Quant;
using System;
using System.Collections.Generic;

using System.Linq;
using System.Text;
using System.Threading;
using System.Windows.Forms;
using static OxfordExtenderWrapper.ExtenderIpcUI;

namespace OxfordExtenderWrapper
{
    enum OxfordControllerState
    {
        READY = 0,
        WORKING = 1,
        SUCCEEDED = 2,
        FAILED = 3,
        ABORT = 4
    };
    [Serializable]
    public class Segment
    {
        private int m_nX;
        private int m_nY;
        private int m_nLength;

        public int X
        {
            get { return m_nX; }
            set
            {
                if (value > 0)
                {
                    m_nX = value;
                }
            }
        }

        public int Y
        {
            get { return m_nY; }
            set
            {
                if (value > 0)
                {
                    m_nY = value;
                }
            }
        }

        public int Length
        {
            get { return m_nLength; }
            set
            {
                if (value > 0)
                {
                    m_nLength = value;
                }
            }
        }
    };
    /// <summary>
    /// Enum EDSConst definition.
    /// </summary>
    enum EDSConst
    {
        MAX_XRAY_BATCH = 1024,
        XANA_CHANNELS = 2000,
        XANA_CHANNELS_MAX = 4192,
        MAX_AMPTIME_CONSTANTS = 10,
        MAX_EV_PER_CHANNELS = 5,
        MAX_ANALYZERS = 5,
        MAX_LEN_ANALYZER_NAME = 16
    };
    [Serializable]
    struct OxfordChord
    {
        public long m_nX;
        public long m_nY;
        public long m_nLength;

    };
    enum OxfordCommandType
    {
        
        GetMagnification = 0,
        SetMagnification = 1,

       
        GetWorkingDistance = 2,
        SetWorkingDistance = 3,

     
        GetBrightness = 4,
        SetBrightness = 5,

      
        GetContrast = 6,
        SetContrast = 7,

    
        GetSEMVoltage = 8,
        SetSEMVoltage = 9,

        //样品台        
        GetStagePosition = 10,
        SetStagePosition = 11,
        GetStageAtX = 12,
        GetStageAtY = 13,
        GetStageAtZ = 14,
        GetStageAtT = 15,
        GetStageAtR = 16,
        SetStageGotoX = 17,
        SetStageGotoY = 18,
        SetStageGotoZ = 19,
        SetStageGotoT = 20,
        SetStageGotoR = 21,
        MoveStageXY = 22,

        //拍图
        ImageAquisition = 23,
        //采集参数设置
        SetImageAcquistionSetting = 24,

        //获取分辨率
        GetImageResolution = 25,
        //设置分辨率
        SetImageResolution= 26,
        //获取bitmap
        GetBitmap = 27,

        //X-ray
        //点采集
        XrayPointCollection = 29,
        COLLECT_XRAYPOINTS=30,
        //面采集
        XrayAreaCollection = 31,
        COLLECT_XRAYFEATURES = 32,


        Exit = 100,

    }
    [Serializable]
    public class ImageAquistionParam
    {

        public ImageAquistionParam()
        {

            this.ImageData = new byte[width * height];

        }
        //in
        public int width;
        public int height;
        public double DwellTime;
        public ImageInputSourceType sourceType;
        //out
        public byte[] ImageData;

    }
    [Serializable]
    public class PointXrayParam
    {
        public PointXrayParam()
        {

            this.XrayData = new uint[2000];
            this.listElement = new Dictionary<string, double>();
        }
        public double dMilliSecondsTime;
        public double x;
        public double y;
        //out
        public uint[] XrayData;
        public Dictionary<string, double> listElement;
        public bool b_quant;
    }
    [Serializable]
    public class AreaXrayParam
    {
        public AreaXrayParam()
        {

            this.XrayData = new uint[2000];
            this.listElement = new Dictionary<string, double>();
        }
        public double dMilliSecondsTime;
        public List<Segment> a_listChord=new List<Segment>();
        public uint[] XrayData;
        public Dictionary<string, double> listElement;
        public bool b_quant;

    }
    [Serializable]
    public struct MoveStageParam
    {
        public float x;
        public float y;
    }
    struct oxfordCommandData
    {
        public OxfordCommandType commandType;
        public bool returnType;
        public MoveStageParam moveStagePrm;

        public ImageAquistionParam grabImgParam;
        public PointXrayParam pointXrayPrm;
        public AreaXrayParam areaXrayPrm;
        public List<PointXrayParam> XrayPrmForPoints;
        public int PointXrayDataReceived;
        public List<AreaXrayParam> XrayPrmForFeatures;
        public int AreaXrayDataReceived;
    }
    public class ExtenderWrapper:MarshalByRefObject
    {

        NLog.Logger log = NLog.LogManager.GetCurrentClassLogger();

        private oxfordCommandData currentCommand;

       
        //控制电镜
        private IMicroscopeController microscopeController = null;
        /// <summary>
        /// IImageAcquisitionController object
        /// </summary>
        private IImageAcquisitionController imageAcquisitionController = null;

        /// <summary>
        /// IImageSettings object
        /// </summary>
        private IImageAcquisitionSettings imageAcquisitionSettings = null;
        //控制器
        private IEdSpectrumAcquisitionController EdSpectrumAcquisitionController = null;
        private IEdSpectrumSettings EdSpectrumSettings = null;
        private IEdSpectrumProcessing EdSpectrumProcessing = null;
        // Use the autoIdSettings to define elements that are known or elements that you want to exclude. They also list elements that cannot be identified
        private IAutoIdSettings autoIdSettings = null;
        private ISEMQuantSettings quantSettings = null;

        //private IEdChordListAcquisitionController _edsChordListController = null;
   
        private IEdChordListSettings _edsChordListSetting;
        private int XRayChannelLength = 2000;

        private int EDSColletionTimeOut = 10000;
  
   

        const int g_nOxfordControllerProcessTime = 4;
        const int g_nOxfordControllerEnergyRange = 20;



        private bool m_bXrayDone = false;
        //电压
        private double m_dHighVoltage;
        //放大倍数
        private double m_dMagnification;
        //工作距离
        private double m_dWorkingDistance;
        //亮度
        private double m_dBirghtness;
        //对比度
        private double m_dContrast;
        //BeamOn
        private bool m_bBeamOn;
        //FilamentOn
        private bool m_bFilamentOn;

        //样品台位置
        private double m_dStageX;
        private double m_dStageY;
        private double m_dStageZ;
        private double m_dStageR;
        private double m_dStageT;

    
       
        private byte[] m_ImageBit = null;
        private long m_nImageWidth = 0;
        private long m_nImageHeight = 0;
        private double m_dImagePixelsize = 0;//it will be initialized when we get an image from the EDS.
        bool m_bAcquistionDone = false;
        private bool m_StageUpdated;
        private bool m_CollumnUpdated;
        private bool m_ExternalScanUpdated;
        const String theElementNameList = ("H,He") +

    (",Li,Be,B,C,N,O,F,Ne") +

    (",Na,Mg,Al,Si,P,S,Cl,Ar") +

    (",K,Ca,Sc,Ti,V,Cr,Mn,Fe,Co,Ni,Cu,Zn,Ga,Ge,As,Se,Br,Kr") +

    (",Rb,Sr,Y,Zr,Nb,Mo,Tc,Ru,Rh,Pd,Ag,Cd,In,Sn,Sb,Te,I,Xe") +

    (",Cs,Ba,La") +

    (",Ce,Pr,Nd,Pm,Sm,Eu,Gd,Tb,Dy,Ho,Er,Tm,Yb,Lu") +

    (",Hf,Ta,W,Re,Os,Ir,Pt,Au,Hg,Tl,Pb,Bi,Po,At,Rn") +

    (",Fr,Ra,Ac") +

    (",Th,Pa,U,Np,Pu,Am,Cm,Bk,Cf,Es,Fm,Md,No,Lr");
        private bool m_ifautoid = true;
        private string m_knownelements;
        //构造函数
        public ExtenderWrapper()
        {
            //ConnectToEDSHardware();
        }
        public bool ConnectToEDSHardware()
        {
            try
            {
                InitMicroscopeController();
                InitImageAcquisition();
                InitXrayAcquistion();
               
                return true;
            }
            catch (Exception e)
            {
                log.Error(e.Message);
                return false;
            }
           

        }
       
        //结束
        public void CloseExtender()
        {
            

                CloseMicroscopeController();
                CloseImageAcquisition();
                CloseXrayAcquistion();
           
           



        }
       
        public bool AquisitionImage(ref ImageAquistionParam p)
        {
            currentCommand.grabImgParam = p;
            currentCommand.commandType = OxfordCommandType.ImageAquisition;

            SetImageAcquistionSetting(p.DwellTime, p.sourceType, p.width);


            try
            {
                int lastingTime = 0;
                m_bAcquistionDone = false;
                imageAcquisitionController.BeginMultipleAcquisition();
                IEnumerable<IElectronImage> images = imageAcquisitionController.StartAcquisition(imageAcquisitionSettings);

                int time1 = Environment.TickCount;

                while (true)
                {
                    if (m_bAcquistionDone)
                    {
                        p.ImageData = m_ImageBit;
                        currentCommand.returnType = true;

                        break;
                    }
                 

                    Application.DoEvents();
                    int time2;
                    
                        time2 = Environment.TickCount;
                        if (time2 - time1 > EDSColletionTimeOut*6)
                        {
                            currentCommand.returnType = false;
                            break;
                        }
                   
                }
            }
            catch (InvalidSettingsException settingsException)
            {
                var sb = new StringBuilder(@"Invalid settings have been supplied: ");
                sb.AppendLine();
                settingsException.ValidationResults.ValidationErrors.ToList().ForEach(ve => sb.AppendFormat("{0}{1}", Environment.NewLine, ve));

                NLog.LogManager.GetCurrentClassLogger().Error(sb.ToString());
            }
            catch (AcquisitionStartException startException)
            {
                string msg = string.Format(@"AcquisitionStartException: {0}", startException.Message);
                NLog.LogManager.GetCurrentClassLogger().Error(msg);
            }
            
            if (currentCommand.returnType == true)
            {

                return true;
            }
            else
            {
                return false;
            }


        }
        public bool MoveStageXY(float x, float y)
        {
          
            currentCommand.moveStagePrm = new MoveStageParam();
            currentCommand.moveStagePrm.x = x;
            currentCommand.moveStagePrm.y = y;
            currentCommand.commandType = OxfordCommandType.MoveStageXY;
          


            var stageDictionary = new Dictionary<Stage, double>
                            {
                                { Stage.StageX, (double)x/1000.0 },
                                { Stage.StageY, (double)y /1000.0}
                            };
            m_StageUpdated = false;
            this.microscopeController.SetStageConditions(stageDictionary);
            currentCommand.returnType = true;
          
            int time1 = Environment.TickCount;
            int time2;

            while (!m_StageUpdated)
            {
                Application.DoEvents();
              

              
                time2 = Environment.TickCount;
                if (time2-time1 > 60000)
                {
                    currentCommand.returnType = false;
                    break;
                }
            }
            if (currentCommand.returnType == true)
            {
                return true;
            }
            else
            {
                return false;
            }

        }
        public bool XrayAreaCollecting(ref AreaXrayParam p)
        {
           
            currentCommand.areaXrayPrm = p;
            currentCommand.commandType = OxfordCommandType.XrayAreaCollection;
            m_bXrayDone = false;

            SetXrayAcquisitionParam(p.dMilliSecondsTime);
            List<Chord> Chords = new List<Chord>();

            foreach (Segment seg in p.a_listChord)
            {
                Chord chord = new Chord(seg.X, seg.Y, seg.Length);
                Chords.Add(chord);
            }
           var chordsList = new ChordList(Chords, m_dImagePixelsize);
            EdSpectrumSettings.ScanSettings.AcquisitionRegion.CreateChordListRegion(chordsList);
            EdSpectrumAcquisitionController.BeginMultipleAcquisition();
            try
            {
                
                IEdSpectrum edSpectrum = EdSpectrumAcquisitionController.StartAcquisition(EdSpectrumSettings);

                var time1 = Environment.TickCount;
                while (true)
                {
                    if (m_bXrayDone)
                    {

                        currentCommand.returnType = true;
                        break;
                    }

                   
                    Application.DoEvents();
                    var time2 = Environment.TickCount;
                    if (time2-time1 > EDSColletionTimeOut * 6)
                    {
                        currentCommand.returnType = false;
                        break;
                    }
                }
            }
            catch (InvalidSettingsException invalidSettingsException)
            {
                string msg = string.Format(@"Invalid Settings Exception:{0}, {1}",
                    invalidSettingsException.Message,
                    invalidSettingsException.ValidationResults.ValidationErrors);
                log.Error(msg);
            }
            catch (AcquisitionStartException acquisitionStartException)
            {
                string msg = string.Format(@"Acquisition Start Exception:{0}", acquisitionStartException.Message);
                log.Error(msg);
            }
           
            if (currentCommand.returnType == true)
            {

                return true;
            }
            else
            {

                return false;
            }
        }
        public bool XrayPointCollecting(ref PointXrayParam p)
        {
            
            currentCommand.pointXrayPrm = p;
            currentCommand.commandType = OxfordCommandType.XrayPointCollection;

            m_bXrayDone = false;

            p.XrayData = new uint[XRayChannelLength];
            p.listElement = new Dictionary<string, double>();

            SetXrayAcquisitionParam(p.dMilliSecondsTime);

           
            EdSpectrumSettings.ScanSettings.AcquisitionRegion.CreatePointRegion(new System.Windows.Point(p.x * m_dImagePixelsize, p.y * m_dImagePixelsize));
            EdSpectrumAcquisitionController.BeginMultipleAcquisition();
            try
            {
                m_bXrayDone = false;
               

                IEdSpectrum edSpectrum = EdSpectrumAcquisitionController.StartAcquisition(EdSpectrumSettings);

                var time1 = Environment.TickCount;
                while (true)
                {
                    if (m_bXrayDone)
                    {

                        currentCommand.returnType = true;
                        break;
                    }
                    Application.DoEvents();

                    var time2 = Environment.TickCount;
                    if (time2-time1 > EDSColletionTimeOut * 6)
                    {
                        EdSpectrumAcquisitionController.EndMultipleAcquisition();
                        log.Warn("XrayStartAcquisition 超时！");

                        currentCommand.returnType = false;
                    }
                }
            }
            catch (InvalidSettingsException invalidSettingsException)
            {

                string msg = string.Format(@"Invalid Settings Exception:{0}, {1}",
                    invalidSettingsException.Message,
                    invalidSettingsException.ValidationResults.ValidationErrors);
                log.Error(msg);
            }
            catch (AcquisitionStartException acquisitionStartException)
            {

                string msg = string.Format(@"Acquisition Start Exception:{0}", acquisitionStartException.Message);
                log.Error(msg);
            }
      
            if (currentCommand.returnType == true)
            {

                return true;
            }
            else
            {

                return false;
            }
        }
        public bool CollectXrayByPoints(ref List<PointXrayParam> a_listPoints, uint a_nXRayAQTime, bool a_bElementInfo)
        {


            currentCommand.XrayPrmForPoints = a_listPoints;
            currentCommand.commandType = OxfordCommandType.COLLECT_XRAYPOINTS;
          

            //log.Info("线程：开始采集多点xray");
            var PointXrayDatas = currentCommand.XrayPrmForPoints;
            currentCommand.PointXrayDataReceived = 0;

            m_bXrayDone = false;
            

            var dMilliSecondsTime = PointXrayDatas[0].dMilliSecondsTime;
            SetXrayAcquisitionParam(dMilliSecondsTime);
            EdSpectrumAcquisitionController.BeginMultipleAcquisition();
            foreach (var prm in PointXrayDatas)
            {

                prm.b_quant = a_bElementInfo;
                EdSpectrumSettings.ScanSettings.AcquisitionRegion.CreatePointRegion(new System.Windows.Point(prm.x * m_dImagePixelsize, prm.y * m_dImagePixelsize));

                try
                {
                    m_bXrayDone = false;

                    IEdSpectrum edSpectrum = EdSpectrumAcquisitionController.StartAcquisition(EdSpectrumSettings);

                }
                catch (InvalidSettingsException invalidSettingsException)
                {

                    string msg = string.Format(@"Invalid Settings Exception:{0}, {1}",
                        invalidSettingsException.Message,
                        invalidSettingsException.ValidationResults.ValidationErrors);
                    log.Error(msg);
                }
                catch (AcquisitionStartException acquisitionStartException)
                {

                    string msg = string.Format(@"Acquisition Start Exception:{0}", acquisitionStartException.Message);
                    log.Error(msg);
                }



            }

            var time1 = Environment.TickCount;
            while (true)
            {
                if (m_bXrayDone)
                {
                    currentCommand.returnType = true;
                    EdSpectrumAcquisitionController.EndMultipleAcquisition();
                    break;
                }
                Application.DoEvents();

                var time2 = Environment.TickCount;
                
                if (time2-time1 > EDSColletionTimeOut * PointXrayDatas.Count)
                {
                    EdSpectrumAcquisitionController.EndMultipleAcquisition();
                   
                    currentCommand.returnType = false;
                }
            }

            if (currentCommand.returnType == true)
            {
             
                return true;
            }
            else
            {

                return false;
            }
        }
        public bool CollectXrayByFeatures(ref List<AreaXrayParam> a_listFeatures, double a_nXRayAQTime, bool a_bElementInfo)
        {


            currentCommand.XrayPrmForFeatures = a_listFeatures;


            currentCommand.commandType = OxfordCommandType.COLLECT_XRAYFEATURES;
            var p = currentCommand.XrayPrmForFeatures;
            currentCommand.AreaXrayDataReceived = 0;
          
          
            m_bXrayDone = false;
           

            var dMilliSecondsTime = p[0].dMilliSecondsTime;
            SetXrayAcquisitionParam(p[0].dMilliSecondsTime);
            EdSpectrumAcquisitionController.BeginMultipleAcquisition();
            foreach (var prm in p)
            {
                prm.b_quant = a_bElementInfo;
                List<Chord> Chords = new List<Chord>();
                Chord chord;
                foreach (Segment seg in prm.a_listChord)
                {
                    if (seg.Length >= 3)
                    {
                         chord = new Chord(seg.X+1, seg.Y, seg.Length-2);//get the middle part
                    }
                    else 
                    {
                         chord = new Chord(seg.X, seg.Y, seg.Length);
                    }
                    
                    Chords.Add(chord);
                }
                var chordsList = new ChordList(Chords, m_dImagePixelsize);
                EdSpectrumSettings.ScanSettings.AcquisitionRegion.CreateChordListRegion(chordsList);

                try
                {
                    m_bXrayDone = false;


                    IEdSpectrum edSpectrum = EdSpectrumAcquisitionController.StartAcquisition(EdSpectrumSettings);

                }
                catch (InvalidSettingsException invalidSettingsException)
                {

                    string msg = string.Format(@"Invalid Settings Exception:{0}, {1}",
                        invalidSettingsException.Message,
                        invalidSettingsException.ValidationResults.ValidationErrors);
                    log.Error(msg);
                }
                catch (AcquisitionStartException acquisitionStartException)
                {

                    string msg = string.Format(@"Acquisition Start Exception:{0}", acquisitionStartException.Message);
                    log.Error(msg);
                }



            }

            var time1 = Environment.TickCount;
            while (true)
            {
                if (m_bXrayDone)
                {
                    currentCommand.returnType = true;
                    EdSpectrumAcquisitionController.EndMultipleAcquisition();
                    break;
                }
                Application.DoEvents();

             
                var time2 = Environment.TickCount;
                if (time2-time1 > EDSColletionTimeOut * p.Count)
                {
                    EdSpectrumAcquisitionController.EndMultipleAcquisition();
                 
                
                    currentCommand.returnType = false;
                    break;
                }
            }

            if (currentCommand.returnType == true)
            {
                a_listFeatures = currentCommand.XrayPrmForFeatures;
                return true;
            }
            else
            {

                return false;
            }


        }
     
    

        //控制电镜初始化
        void InitMicroscopeController()
        {
            this.microscopeController = AcquireFactory.CreateMicroscopeControl();
            this.microscopeController.ColumnChange += this.OnMicroscopeColumnChange;
            this.microscopeController.StageChange += this.OnMicroscopeStageChange;
            this.microscopeController.ColumnConnected += this.OnMicroscopeColumnConnected;
            this.microscopeController.StageConnected += this.OnMicroscopeStageConnected;
            this.microscopeController.ChangeCompleted += this.OnMicroscopeChangeCompleted;
           

            //ReadMicroscopeColumn();

            //ReadStage();

        }

        //控制电镜释放
        void CloseMicroscopeController()
        {
            if (microscopeController != null)
            {
              
                this.microscopeController.ColumnChange -= this.OnMicroscopeColumnChange;
                this.microscopeController.StageChange -= this.OnMicroscopeStageChange;
                this.microscopeController.ColumnConnected -= this.OnMicroscopeColumnConnected;
                this.microscopeController.StageConnected -= this.OnMicroscopeStageConnected;
                this.microscopeController.ChangeCompleted -= this.OnMicroscopeChangeCompleted;
                microscopeController = null;
            }
           
        }

        //读取当前的电镜控制值
        private void ReadMicroscopeColumn()
        {
            var columnCapabilities = this.microscopeController.ColumnCapabilities;
            var columnConditions = this.microscopeController.ColumnConditions;

            if (columnCapabilities.Magnification.CanRead)
            {
                m_dMagnification = columnConditions.Magnification;
            }

            if (columnCapabilities.WorkingDistance.CanRead)
            {
                m_dWorkingDistance = columnConditions.WorkingDistance;
            }

            if (columnCapabilities.HighVoltage.CanRead)
            {
                m_dHighVoltage = columnConditions.HighVoltage;
            }

            if (columnCapabilities.Brightness.CanRead)
            {
                m_dBirghtness = columnConditions.Brightness;
            }

            if (columnCapabilities.Contrast.CanRead)
            {
                m_dContrast = columnConditions.Contrast;
            }

            if (columnCapabilities.BeamOn.CanRead)
            {
                m_bBeamOn = Convert.ToBoolean(columnConditions.BeamOn);
            }

            if (columnCapabilities.FilamentOn.CanRead)
            {
                m_bFilamentOn = Convert.ToBoolean(columnConditions.FilamentOn);
            }
        }

        //读取样品台位置
        private void ReadStage()
        {
            var stageCapabilities = this.microscopeController.StageCapabilities;
            var stageConditions = this.microscopeController.StageConditions;
            while (!stageCapabilities.StageX.CanRead)
            {
                Thread.Sleep(100);
            }
            if (stageCapabilities.StageX.CanRead)
            {
                this.m_dStageX = stageConditions.StageX*1000.0;
            }

            if (stageCapabilities.StageY.CanRead)
            {
                this.m_dStageY = stageConditions.StageY*1000.0;
            }

            if (stageCapabilities.StageZ.CanRead)
            {
                this.m_dStageZ = stageConditions.StageZ;
            }

            if (stageCapabilities.StageT.CanRead)
            {
                this.m_dStageT = stageConditions.StageT;
            }

            if (stageCapabilities.StageR.CanRead)
            {
                this.m_dStageR = stageConditions.StageR;
            }
        }

        //电镜控制改变事件
        private void OnMicroscopeColumnChange(object sender, EventArgs e)
        {
          
            ReadMicroscopeColumn();
        }

        //样品台控制改变事件
        private void OnMicroscopeStageChange(object sender, EventArgs e)
        {
           
            ReadStage();
        }

        //镜筒控制连接或断开时的事件
        private void OnMicroscopeColumnConnected(object sender, EventArgs e)
        {
            ReadMicroscopeColumn();
        }

        //样品台控制连接或断开时的事件
        private void OnMicroscopeStageConnected(object sender, EventArgs e)
        {
          
            ReadStage();
        }

        //样品台控制、电镜控制、外围控制的事件改变完成
        private void OnMicroscopeChangeCompleted(object sender, CompletedEventArgs e)
        {
            if (e.Control == MicroscopeControlType.Stage)
            {
                if (e.Success)
                {
                 
                    m_StageUpdated = true;
                 
                }

            }
            else if (e.Control == MicroscopeControlType.Column)
            {
                if (e.Success)
                {
                    m_CollumnUpdated = true;
                }

            }
            else if (e.Control == MicroscopeControlType.ExternalScan)
            {
                if (e.Success)
                {
                    m_ExternalScanUpdated = true;
                }
            
            }
            ReadMicroscopeColumn();
            ReadStage();
        }


        public float GetMagnification()
        {
            ReadMicroscopeColumn();
            return (float)m_dMagnification;
        }
        public Boolean SetMagnification(float set)
        {
            Dictionary<Column, double> columnDictionary = new Dictionary<Column, double>
            {
                { Column.Magnification, (double)set }

            };

            m_CollumnUpdated = false;
            this.microscopeController.SetColumnConditions(columnDictionary);
            int time1 = Environment.TickCount;
            int time2;
            while (!m_CollumnUpdated)
            {
                Application.DoEvents();
                time2 = Environment.TickCount;
                if (time2 - time1 > 10000)
                {
                    currentCommand.returnType = false;
                    return false;
                   
                }
            }
            return true;
        }

        //焦距
        public float GetWorkingDistance()
        {
            ReadMicroscopeColumn();
            return (float)m_dWorkingDistance;
        }
        public Boolean SetWorkingDistance(float set)
        {
            Dictionary<Column, double> columnDictionary = new Dictionary<Column, double>
            {
                { Column.WorkingDistance, (double)set }

            };

            m_CollumnUpdated = false;
            this.microscopeController.SetColumnConditions(columnDictionary);
            int time1 = Environment.TickCount;
            int time2;
            while (!m_CollumnUpdated)
            {
                Application.DoEvents();
                time2 = Environment.TickCount;
                if (time2 - time1 > 10000)
                {
                    currentCommand.returnType = false;
                    return false;                  
                }
            }
            return true;
        }

        //亮度
        public float GetBrightness()
        {
            ReadMicroscopeColumn();
            return (float)m_dBirghtness;
        }
        public Boolean SetBrightness(float set)
        {
            Dictionary<Column, double> columnDictionary = new Dictionary<Column, double>
            {
                { Column.Brightness, (double)set }

            };

            m_CollumnUpdated = false;
            this.microscopeController.SetColumnConditions(columnDictionary);
            int time1 = Environment.TickCount;
            int time2;
            while (!m_CollumnUpdated)
            {
                Application.DoEvents();
                time2 = Environment.TickCount;
                if (time2 - time1 > 2000)
                {
                    currentCommand.returnType = false;
                    return false;
                   
                }
            }
            return true;
        }

        //对比度
        public float GetContrast()
        {
            ReadMicroscopeColumn();
            return (float)m_dContrast;
        }
        public Boolean SetContrast(float set)
        {
            Dictionary<Column, double> columnDictionary = new Dictionary<Column, double>
            {
                { Column.Contrast, (double)set }

            };

            m_CollumnUpdated = false;
            this.microscopeController.SetColumnConditions(columnDictionary);
            int time1 = Environment.TickCount;
            int time2;
            while (!m_CollumnUpdated)
            {
                Application.DoEvents();
                time2 = Environment.TickCount;
                if (time2 - time1 > 2000)
                {
                    currentCommand.returnType = false;
                    return false;
                    //break;
                }
            }

            return true;
        }

        //SEM电压
        public float GetSEMVoltage()
        {
            ReadMicroscopeColumn();
            return (float)m_dHighVoltage;
        }
        public Boolean SetSEMVoltage(float set)
        {
            Dictionary<Column, double> columnDictionary = new Dictionary<Column, double>
            {
                { Column.HighVoltage, (double)set }

            };

           
            m_CollumnUpdated = false;
            this.microscopeController.SetColumnConditions(columnDictionary);
            int time1 = Environment.TickCount;
            int time2;
            while (!m_CollumnUpdated)
            {
                Application.DoEvents();
                time2 = Environment.TickCount;
                if (time2 - time1 > 10000)
                {
                    currentCommand.returnType = false;
                    return false;
                    //break;
                }
            }
            return true;
        }
        public bool SetSemScanExternal(bool b)
        {
            m_ExternalScanUpdated = false;
            if (!b)
            {
                EndMultipleAquisition();
            }
            this.microscopeController.SetExternalScan(b);
            int time1 = Environment.TickCount;
            int time2;
            while (!m_ExternalScanUpdated)
            {
                Application.DoEvents();
                time2 = Environment.TickCount;
                if (time2 - time1 > 2000)
                {
                    currentCommand.returnType = false;
                    return false;
                    //break;
                }
            }
            
            
            return true;
        }
       
        //样品台
        public float[] GetStagePosition()
        {
            ReadStage();
            float[] ret = new float[5];

            ret[0] = (float)m_dStageX;
            ret[1] = (float)m_dStageY;
            ret[2] = (float)m_dStageZ;
            ret[3] = (float)m_dStageT;
            ret[4] = (float)m_dStageR;

            return ret;
        }
        public Boolean SetStagePosition(float[] set)
        {
            double stageX = (double)set[0];
           
            double stageY = (double)set[1];
            
            double stageZ = (double)set[2];
            
            double stageT = (double)set[3];
           
            double stageR = (double)set[4];
           

            var stageDictionary = new Dictionary<Stage, double>
            {
                { Stage.StageX, (double)stageX/1000.0 },
                { Stage.StageY, (double)stageY/1000.0 },
                { Stage.StageZ, (double)stageZ },
                { Stage.StageT, (double)stageT },
                { Stage.StageR, (double)stageR }
            };
            m_StageUpdated = false;
            this.microscopeController.SetStageConditions(stageDictionary);
            int time1 = Environment.TickCount;
            int time2;
            while (!m_StageUpdated)
            {
                Application.DoEvents();
                time2 = Environment.TickCount;
                if (time2 - time1 > 20000)
                {
                    currentCommand.returnType = false;
                    return false;
                    //break;
                }
            }

            return true;
        }
        public float GetStageAtX()
        {
            ReadStage();
            return (float)m_dStageX;
        }
        public float GetStageAtY()
        {
            ReadStage();
            return (float)m_dStageY;
        }
        public float GetStageAtZ()
        {
            ReadStage();
            return (float)m_dStageZ;
        }
        public float GetStageAtT()
        {
            ReadStage();
            return (float)m_dStageT;
        }
        public float GetStageAtR()
        {
            ReadStage();
            return (float)m_dStageR;
        }

        public Boolean SetStageGotoX(float set)
        {
            double stageX = (double)set;
           
            var stageDictionary = new Dictionary<Stage, double>
            {
                { Stage.StageX, (double)stageX/1000.0 }
            };
            m_StageUpdated = false;
            this.microscopeController.SetStageConditions(stageDictionary);
            int time1 = Environment.TickCount;
            int time2;
            while (!m_StageUpdated)
            {
                Application.DoEvents();
                time2 = Environment.TickCount;
                if (time2 - time1 > 20000)
                {
                    currentCommand.returnType = false;
                    return false;
                    //break;
                }
            }
            return true;
        }
        public Boolean SetStageGotoY(float set)
        {

            double stageY = (double)set;
    

            var stageDictionary = new Dictionary<Stage, double>
            {
                { Stage.StageY, (double)stageY/1000.0 }
            };
            m_StageUpdated = false;
            this.microscopeController.SetStageConditions(stageDictionary);
            int time1 = Environment.TickCount;
            int time2;
            while (!m_StageUpdated)
            {
                Application.DoEvents();
                time2 = Environment.TickCount;
                if (time2 - time1 > 20000)
                {
                    currentCommand.returnType = false;
                    return false;
                    //break;
                }
            }
            return true;
        }
        public Boolean SetStageGotoZ(float set)
        {
            double stageZ = (double)set;
  

            var stageDictionary = new Dictionary<Stage, double>
            {
                { Stage.StageZ, (double)stageZ }
            };
            m_StageUpdated = false;
            this.microscopeController.SetStageConditions(stageDictionary);
            int time1 = Environment.TickCount;
            int time2;
            while (!m_StageUpdated)
            {
                Application.DoEvents();
                time2 = Environment.TickCount;
                if (time2 - time1 > 20000)
                {
                    currentCommand.returnType = false;
                    return false;
                    //break;
                }
            }
            return true;
        }
        public Boolean SetStageGotoT(float set)
        {
            double stageT = (double)set;


            var stageDictionary = new Dictionary<Stage, double>
            {
                { Stage.StageT, (double)stageT }
            };

            m_StageUpdated = false;
            this.microscopeController.SetStageConditions(stageDictionary);
            int time1 = Environment.TickCount;
            int time2;
            while (!m_StageUpdated)
            {
                Application.DoEvents();
                time2 = Environment.TickCount;
                if (time2 - time1 > 20000)
                {
                    currentCommand.returnType = false;
                    return false;
                  
                }
            }
            return true;
        }
        public Boolean SetStageGotoR(float set)
        {
            double stageR = (double)set;
       
            var stageDictionary = new Dictionary<Stage, double>
            {
                { Stage.StageR, (double)stageR }
            };

            m_StageUpdated = false;
            this.microscopeController.SetStageConditions(stageDictionary);
            int time1 = Environment.TickCount;
            int time2;
            while (!m_StageUpdated)
            {
                Application.DoEvents();
                time2 = Environment.TickCount;
                if (time2 - time1 > 20000)
                {
                    currentCommand.returnType = false;
                    return false;
                    //break;
                }
            }
            return true;
        }
      

        #region 拍图
       

        //图像扫描尺寸
        public double[] ImageScanSize =
        {
            32,
            64,
            128,
            256,
            512,
            704,
            768,
            1024,
            2048,
            4096,
            8192
        };
       

        public double GetDImagePixelsize()
        {
            return m_dImagePixelsize;
        }

        public void SetDImagePixelsize(double value)
        {
            m_dImagePixelsize = value;
        }

        void InitImageAcquisition()
        {

            imageAcquisitionController = AcquireFactory.CreateImageServer();
            imageAcquisitionSettings = AcquireFactory.CreateImageSettings();
           
         
            imageAcquisitionController.ExperimentStarted += this.OnImageExperimentStarted;
            imageAcquisitionController.ExperimentFinished += this.OnImageExperimentFinished;
          
        }
        void InitXrayAcquistion()
        {
            EdSpectrumSettings = AcquireFactory.CreateEdSpectrumSettings();
            EdSpectrumAcquisitionController = AcquireFactory.CreateEdSpectrumServer();
            EdSpectrumProcessing = ProcessingFactory.CreateSpectrumProcessing();
            // Use the autoIdSettings to define elements that are known or elements that you want to exclude. They also list elements that cannot be identified
            autoIdSettings = ProcessingFactory.CreateAutoIdSettings();
            
            quantSettings = ProcessingFactory.CreateSEMQuantSettings();

            EdSpectrumAcquisitionController.ExperimentFinished += this.OnEdSpectrumExperimentFinished;
            //EdSpectrumAcquisitionController.ExperimentStarted += this.OnEdSpectrumExperimentStarted;
          
        }
        //控制电镜释放
        void CloseImageAcquisition()
        {
            if (imageAcquisitionController != null)
            {
                imageAcquisitionController.ExperimentStarted -= this.OnImageExperimentStarted;
                imageAcquisitionController.ExperimentFinished -= this.OnImageExperimentFinished;
                imageAcquisitionController = null;
            }
            
        }
        void CloseXrayAcquistion()
        {
            if (EdSpectrumAcquisitionController != null)
            {
                EdSpectrumAcquisitionController.ExperimentFinished -= this.OnEdSpectrumExperimentFinished;
                //EdSpectrumAcquisitionController.ExperimentStarted -= this.OnEdSpectrumExperimentStarted;
                EdSpectrumAcquisitionController = null;
            }

        }

        /// <summary>
        /// OnImageExperimentStarted
        /// </summary>
        private void OnImageExperimentStarted(object sender, AcquisitionStartedEventArgs<IElectronImage[]> e)
        {
            NLog.Logger log = NLog.LogManager.GetCurrentClassLogger();
            log.Info("拍图开始事件！");
        }

        //int m_nState;
        /// <summary>
        /// OnImageExperimentFinished
        /// </summary>
        private void OnImageExperimentFinished(object sender, AcquisitionFinishedEventArgs<IElectronImage[]> e)
        {
            IElectronImage electronImage = e.Value[0];

            if (!ReadImageData(electronImage, out m_ImageBit, out m_nImageWidth, out m_nImageHeight, out m_dImagePixelsize))
            {
             
                NLog.LogManager.GetCurrentClassLogger().Error("图像采集完成，获取图像像素失败！");
            }

            if (m_ImageBit != null && m_ImageBit.Length == m_nImageWidth * m_nImageHeight)
            {
                m_bAcquistionDone = true;
            }
        }


        bool ReadImageData(IElectronImage a_electronImage, out Byte[] a_pImageBits, out long a_nImageHeight, out long a_nImageWidth, out double a_nPixelSize)
        {
            a_nImageHeight = 0;
            a_nImageWidth = 0;
            a_nPixelSize = 0;
            a_pImageBits = null;

            if (a_electronImage == null)
            {
                return false;
            }

            a_nImageHeight = a_electronImage.Height;
            a_nImageWidth = a_electronImage.Width;
            a_nPixelSize = a_electronImage.PixelSize;

            int nBytesPerPixel = a_electronImage.BytesPerPixel;
            long nImageSize = a_nImageHeight * a_nImageWidth;
            long nBufferSize = nImageSize * nBytesPerPixel;

            Byte[] imageData = new Byte[nBufferSize];
            a_electronImage.GetData(imageData);

            a_pImageBits = new Byte[nImageSize];
            // default, oxford will return short image, we need to convert to byte
            if (nBytesPerPixel == 2)
            {
                int nBSEValue = 0;
                for (int i = 0; i < nImageSize; ++i)
                {
                    nBSEValue = imageData[0 + i * nBytesPerPixel] + imageData[1 + i * nBytesPerPixel] * 255;
                    a_pImageBits[i] = (Byte)(nBSEValue / 128.0 + 0.5);
                }
            }
            else
            {
                string msg = string.Format("image byte per pixel other than 2({0}), image convert may wrong", nBytesPerPixel);
                NLog.LogManager.GetCurrentClassLogger().Error(msg);

                int nOffset = nBytesPerPixel - 1;
                for (int i = 0; i < nImageSize; ++i)
                {
                    a_pImageBits[i] = imageData[nOffset + i * nBytesPerPixel];
                }
            }

            return true;
        }


        //a_dDwellTime : 1~100000之间的数 
        //a_sImageType : 1: SE, 2: Bse
        //a_dImageScanSize : 图像分辨率，图像的高
        public bool SetImageAcquistionSetting(double a_dDwellTime, ImageInputSourceType a_nImageType, double a_dImageScanSize)
        {


            IImageSettings imageSettings = imageAcquisitionSettings.ImageSettings;
            IImageCapabilities imageCapabilities = imageAcquisitionSettings.ImageCapabilities;
            IImageScanSettings scanSettings = imageAcquisitionSettings.ScanSettings;



            if (a_dDwellTime > imageCapabilities.MaximumImageDwellMicroseconds)
            {
                imageSettings.DwellTimeMicroSeconds = imageCapabilities.MaximumImageDwellMicroseconds;
            }

            if (a_dDwellTime < imageCapabilities.MinimumImageDwellMicroseconds)
            {
                imageSettings.DwellTimeMicroSeconds = imageCapabilities.MinimumImageDwellMicroseconds;
            }
            else
            {
                imageSettings.DwellTimeMicroSeconds = a_dDwellTime;
            }

            imageSettings.InputSources.ToList().ForEach(i => imageSettings.EnableInputSource(i.Key, false));
            imageSettings.EnableInputSource((ImageInputSources)a_nImageType, true);

            if (!ImageScanSize.Contains(a_dImageScanSize))
            {
                NLog.LogManager.GetCurrentClassLogger().Error("图像尺寸输入无效");
                return false;
            }

            var pixelSize = 1d / a_dImageScanSize;


            scanSettings.AcquisitionRegion.CreateFullFieldRegion(pixelSize);
            
            return true;
        }

       
        #endregion

        #region X-ray
      
 

     

        void SetXrayAcquisitionParam(double a_dMilliSecondsTime)
        {
            EdSpectrumSettings.EdSettings.AcquisitionMode = EdAcquireMode.LiveTime; // RealTime or LiveTime

            EdSpectrumSettings.EdSettings.AcquisitionTime = TimeSpan.FromMilliseconds(a_dMilliSecondsTime);

            EdSpectrumSettings.EdSettings.ProcessTime = 4;
            EdSpectrumSettings.EdSettings.EnergyRange = 20;
            EdSpectrumSettings.EdSettings.NumberOfChannels = 4096;
          
        }
        private bool GetAtomicNumberByEleName(string name,out int atomicNum)
        {
            var allelenames = theElementNameList.Split(',');
            for (int i = 0; i < allelenames.Length; i++)
            {
                if (allelenames[i] == name)
                {
                    atomicNum= i+1;
                    return true;
                }
            
            }
            atomicNum=0;
            return false;
        }
 
        /// <summary>
        /// Called when IEdSpectrumAcquisitionController Experiment Finished
        /// </summary>
        /// <param name="sender">sender object</param>
        /// <param name="e">The instance containing the event data.</param>
        private void OnEdSpectrumExperimentFinished(object sender, AcquisitionFinishedEventArgs<IEdSpectrum> e)
        {

            IEdSpectrumAcquisitionController edSpectrumAcquisitionController = sender as IEdSpectrumAcquisitionController;

             uint[] m_XrayData;

            NLog.Logger log = NLog.LogManager.GetCurrentClassLogger();
            IEdSpectrum edSpectrum = e.Value;

            if (!ReadXrayData(edSpectrum, out m_XrayData, XRayChannelLength))
            {
                NLog.LogManager.GetCurrentClassLogger().Error("Xray采集完成，获取xray失败！");
            }
            long nXraycount = 0;
            for (int i = 0; i < 2000; i++)
            {
                nXraycount += m_XrayData[i];
            }

            //Quantify processing
            bool bquant=false;
            if (currentCommand.commandType == OxfordCommandType.XrayPointCollection)
            {
                bquant = currentCommand.pointXrayPrm.b_quant;
            }
            else if (currentCommand.commandType == OxfordCommandType.XrayAreaCollection)
            {
                bquant = currentCommand.areaXrayPrm.b_quant;
            }
            else if (currentCommand.commandType == OxfordCommandType.COLLECT_XRAYPOINTS)
            {
                var curXrayData = currentCommand.XrayPrmForPoints[currentCommand.PointXrayDataReceived];
                bquant = curXrayData.b_quant;


            }
            else if (currentCommand.commandType == OxfordCommandType.COLLECT_XRAYFEATURES)
            {
                var curXrayData = currentCommand.XrayPrmForFeatures[currentCommand.AreaXrayDataReceived];
                bquant = curXrayData.b_quant;
            }
            var m_listElement = new Dictionary<string, double>();
            if (bquant)
            {
                if (m_ifautoid == false)
                {
                    log.Warn(autoIdSettings.KnownElements);
                    autoIdSettings.ClearKnownElements();
                    //m_knownelements = "K,Ca,Sc,Ti,V,Mn,Co,Ni,Cu,Zn,Ga,Ge,As,Se,Br,Kr";
                    var knownelenames = m_knownelements.Split(',');

                    foreach (var ele in knownelenames)
                    {
                        int atomicnum;
                        if (GetAtomicNumberByEleName(ele, out atomicnum))
                        {
                           
                            autoIdSettings.SetKnownElement(atomicnum, true);
                        }

                    }

                    log.Warn(autoIdSettings.KnownElements);
                   
                }
                else 
                {
                   
                }
                
                EdSpectrumProcessing.IdentifyElements(e.Value, autoIdSettings);
                // While it is possible to choose other elements, Oxygen is the only supported element by stoichiometry.
                quantSettings.CombinedElement = 8;
                quantSettings.Normalised = true;
                ISEMQuantStatus quantStatus = EdSpectrumProcessing.SEMQuantifySpectrum(e.Value, quantSettings);//(a_nChannelData, OIHelper::SEMQuantSettings);
                IEnumerable<ISEMQuantResult> Results = quantStatus.Results;


                var ie = Results.GetEnumerator();

               

                while (ie.MoveNext())
                {
                    ISEMQuantResult result = ie.Current;

                    if (result.WeightPercent != 0)
                    {
                        m_listElement.Add(ElementProperties.GetElementSymbol(result.AtomicNumber), result.WeightPercent);
                    }

                }
            }
            //------------------------

            if (m_XrayData != null && m_XrayData.Length == XRayChannelLength)
            {

                if (currentCommand.commandType == OxfordCommandType.XrayPointCollection)
                {
                    currentCommand.pointXrayPrm.XrayData = m_XrayData;
                    currentCommand.pointXrayPrm.listElement = m_listElement;
                    m_bXrayDone = true;
                }
                else if (currentCommand.commandType == OxfordCommandType.XrayAreaCollection)
                {
                    currentCommand.areaXrayPrm.XrayData = m_XrayData;
                    currentCommand.areaXrayPrm.listElement = m_listElement;
                    m_bXrayDone = true;
                }
                else if (currentCommand.commandType == OxfordCommandType.COLLECT_XRAYPOINTS)
                {
                    var curXrayData = currentCommand.XrayPrmForPoints[currentCommand.PointXrayDataReceived];
                    curXrayData.XrayData = m_XrayData;
                    curXrayData.listElement = m_listElement;
                    currentCommand.PointXrayDataReceived += 1;

                    if (currentCommand.PointXrayDataReceived == currentCommand.XrayPrmForPoints.Count)
                    {
                        m_bXrayDone = true;
                    }


                }
                else if (currentCommand.commandType == OxfordCommandType.COLLECT_XRAYFEATURES)
                {
                    var curXrayData = currentCommand.XrayPrmForFeatures[currentCommand.AreaXrayDataReceived];
                    curXrayData.XrayData = m_XrayData;
                    curXrayData.listElement = m_listElement;
                    currentCommand.AreaXrayDataReceived += 1;
                    if (currentCommand.AreaXrayDataReceived == currentCommand.XrayPrmForFeatures.Count)
                    {
                        m_bXrayDone = true;
                    }
                }
               

            }


        }

        bool ReadXrayData(IEdSpectrum a_spectrum, out uint[] a_pSpectrumData, int a_nBufferSize)
        {
            a_pSpectrumData = new uint[a_nBufferSize];

            int[] xrayData = new int[a_spectrum.NumberOfChannels];
            a_spectrum.GetChannelData(xrayData);

            double dZeroChannelValue = a_spectrum.ZeroChannelValue;

            int nChannelStart = 0;
            if (dZeroChannelValue < 0)  // zero channel value should less than zero
            {
                nChannelStart = (int)(-dZeroChannelValue / a_spectrum.ChannelWidth + 0.5);
            }

            int nDataLength = (int)(a_spectrum.EnergyRange * 1000 / a_spectrum.ChannelWidth + 0.5);

            double dStep1 = 1.0 / nDataLength;
            double dStep2 = 1.0 / a_nBufferSize;

            for (int i = 0; i < nDataLength; ++i)
            {
                uint nValue = (uint)(xrayData[i + nChannelStart] > 0 ? xrayData[i + nChannelStart] : 0);

                double dBinPos = i * dStep1;

                long nLeftBin = (long)(dBinPos / dStep2);

                // calculate % into left bin
                double dLeft_Percent = (double)(nLeftBin + 1) - dBinPos / dStep2; // ((nLeftBin + 1)*dStep2 - dBinPos)/dStep2

                // calculate data into the left bin
                uint nValueToLeftBin = (uint)((double)nValue * dLeft_Percent + 0.5);

                // put data into bins
                a_pSpectrumData[nLeftBin] += nValueToLeftBin;
                if ((nLeftBin + 1) < a_nBufferSize)
                {
                    a_pSpectrumData[nLeftBin + 1] += (nValue - nValueToLeftBin);
                }
            }

            return true;
        }
    

        public bool IsAcquiringSpectrum()
        {
            return EdSpectrumAcquisitionController.IsAcquiring;
        }

      


        public void BeginMultipleAquisition()
        {

            EdSpectrumAcquisitionController.BeginMultipleAcquisition();
        }

        public void EndMultipleAquisition()
        {
            EdSpectrumAcquisitionController.EndMultipleAcquisition();
        }


       
        public bool GetSemBeamOn()
        {
            var beamon = microscopeController.ColumnConditions.BeamOn;
            if (beamon == 1)
            {
                return true;
            }
            else 
            {
                return false;
            
            }
           
        }
        public void StopXrayAquisition()
        {

            EdSpectrumAcquisitionController.StopAcquisition();


        }
        public void SetQuantifiCationParam(bool IfAutoId, string knownElements)
        {
            m_ifautoid = IfAutoId;
            m_knownelements = knownElements;


        }


        #endregion

    }
}